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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002151-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 48367.8 Da PI: 6.4592 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 62 | 113 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+++N ++ Lr+llP+a + kKls +++ + ++YI +L WALNUT_00002151-RA 62 QKLNHNASERARRKKMNGLYSSLRSLLPEA--DQMKKLSIPTTVSRMIKYIPEL 113 5789*************************6..49999**************988 PP | |||||||
2 | HLH | 41.8 | 1.9e-13 | 267 | 318 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+++N ++ Lr+llP+a + kKls +++ + ++YI +L WALNUT_00002151-RA 267 QKLNHNASERDRRKKMNGLYSSLRSLLPEA--DQMKKLSIPTTVSRMIKYIPEL 318 5789*************************6..49999**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.373 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.85E-11 | 62 | 117 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 62 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-13 | 62 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 63 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.418 | 266 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 267 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 267 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.43E-11 | 267 | 322 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 268 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-8 | 272 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MLAIGLESEQ YSINQDQYCQ SYEDPQTFES AHHKQVGLDP HAHVTAPTAP VGGGGGDPKM 60 VQKLNHNASE RARRKKMNGL YSSLRSLLPE ADQMKKLSIP TTVSRMIKYI PELEQQVVGL 120 IQRKEELLSR ISRQVDQNTH QENQPKGSVA AWISLSTVSA SRVNDREVVI QIPTCEDQKT 180 PLSEILLALE EDGLLLLNAS SFEVFGGRAF YNLHLQEYCQ SYGIHEDPQT FESAHHKQVG 240 LDPHAHVTAP TAPVGGGGGG GDPKMVQKLN HNASERDRRK KMNGLYSSLR SLLPEADQMK 300 KLSIPTTVSR MIKYIPELEQ QVVGLIQRKE ELLSRISRQV DQNTHQENQP KGSVAAWISL 360 STVSASRVND REVVIQIPTC EDQKTPLSEI LLALEEDGLL LLNASSFEVF GGRAFYNLHL 420 QEVIKIDKVD ACTTI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271872.1 | 3e-67 | PREDICTED: transcription factor ORG2 | ||||
Swissprot | Q9M1K1 | 6e-52 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A5C2W4 | 1e-67 | A5C2W4_VITVI; Putative uncharacterized protein | ||||
TrEMBL | D7TF07 | 9e-68 | D7TF07_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_13s0047g00450.t01 | 3e-67 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-44 | bHLH family protein |